Aug 1, 2018

Joint Session #1

Session Chairs: Erle Robertson & Elizabeth White

Oral Talk #97
Point-of-Care Detection of KSHV and EBV to Diagnose Kaposi
Sarcoma and Endemic Burkitt Lymphoma
Ethel Cesarman1, Andrea Gardner1, Ryan Snodgrass2, Julio Alvarez1, Varun Kopparthy2, David Erickson2
1Weill Cornell Medical College, 2Cornell University
Diagnosis of cancer in Subequatorial Africa (SSA) is hampered by difficulty accessing pathology support and ancillary testing such as immunohistochemistry. This leads to patients presenting with advanced disease that results in a poor clinical outcome for patients with Kaposi sarcoma (KS) and endemic Burkitt lymphoma (eBL), two common cancers in this region. We developed a low-cost portable device, called TINY (Tiny Isothermal Nucleic acid Amplification sYstem). This lightweight device performs loop- mediated isothermal amplification (LAMP) that runs on a variety of power sources, including solar. We proposed the molecular detection of KSHV in KS biopsies could be provide diagnostic information and be faster than standard pathology. We tested this hypothesis using qPCR and TINY. Biopsies were taken and DNA extraction was performed, followed by conventional quantitative PCR (qPCR) amplification and assessment by TINY. qPCR had a sensitivity of 93% and specificity of 915 (N=347) and TINY had a specificity and sensitivity of 91% (N=128). Testing conducted in SAA provided results within 3 hours, and the longest time went to DNA extraction from skin biopsies. A second disease that could be diagnosed by molecular viral detection is eBL, regularly associated with EBV infection in SSA. In contrast to KS, diagnosis of eBL can be achieved by using cytological specimens obtained by fine needle aspiration (FNA) tumor biopsies, and presence of EBV can distinguish these from other conditions such non-malignant lymphadenopathies. Therefore, we have developed a process-free assay that seamlessly integrates into TINY. The limit of detection was determined to be 90 copies per reaction with sensitivity of 99% at a threshold cutoff time of 30 minutes. To overcome the need for DNA extraction, a solution that allows extraction-free amplification was developed and tested with cell-based samples that mimic material obtained by FNA. This cells-to-LAMP solution produces amplification threshold values on the same order as DNA purified with a commercial kit. In combination with our established TINY system, a direct cells-to-LAMP system has been developed to rapidly detect EBV in lymphomas from FNA at the point-of- care. 

Portable TINY kit to obtain liquid biopsy from potential KS patients
TINY: tiny isothermal nucleic acid quantification system
Inexpensive : 
LAMP: isothermal nucleic acid amplification (loop mediated isothermal amplification

TINY connects to a laptop for control if unit, real time amplification monitoring and reporting of results

Portable sample processing
Biopsy to process less than 2.5h

EBERs to LAMP in TINY kit for endemic BL children

Detection of EBV in fine needle aspirated (FNA) biopsies from mouse xenografts of BL cell line

Conclusion
An extraction - free cell to LAMP DNA detection method has been validated in the lab and in TINY

Oral Talk #98
The Chemokine CXCL14 Suppresses HPV-positive Head and
Neck Cancer through the Antigen-Specific CD8+ T Cell
Response
Joseph A. Westrich1, Daniel W. Vermeer2, Alexa Silva1, Louis Cicchini1, John H. Lee2, William C. Spanos2, Dohun Pyeon1,3
1University of Colorado School of Medicine, 2Sanford Research, 3Michigan State University

While several proinflammatory chemokines are upregulated during -associated cancer progression, expression of human papillomavirus (HPV) the homeostatic chemokine CXCL14 is epigenetically downregulated by the HPV oncoprotein E7. We have previously shown that restoration of CXCL14 expression in HPV-positive head and neck cancer (HNC) cells dramatically suppresses tumor growth in immunocompetent syngeneic mice, but not in immunodeficient mice. CXCL14 expression induces natural killer (NK) and T cell chemotaxis in vitro and increases NK and T cell populations in the tumor draining lymph node in vivo. To determine the mechanism of CXCL14-mediated tumor suppression, we tested tumor growth in NK or CD8+ T cell deficient mice transplanted with CXCL14-expressing HNC cells. The results show that all CD8+ T cell deficient mice transplanted with CXCL14-expressing HNC cells grow tumor and have significantly reduced survival. In contrast, NK cell deficiency facilitated tumor growth, but did not significantly reduce survival with ~20% of mice still not growing tumor. To determine if the antigen-specificity of CD8+ T cells is important for
CXCL14-mediated tumor suppression, we tested tumor growth in . All OT-1 mice transplanted with CXCL14-expressing HNC cells died from tumor burden, while the majority of wildtype mice transplanted with CXCL14- expressing HNC cells survived without any sign of tumor growth. These results suggest that antigen-specific CD8+ T cell responses are required for CXCL14-mediated tumor suppression. Interestingly, CXCL14 expression reversed the inhibition of MHC-I expression by HPV, almost completely restoring MHC-I expression on HPV-positive HNC cells. Additionally, CXCL14-mediated tumor suppression disappeared in mice transplanted with CXCL14 expressing HNC cells with MHC-I knockdown. We further show that CXCL14 expression induces IFN􏰀 and TNF􏰁 production and significantly enhances tumor cell killing activity of CD8+ T cells in vitro. These results suggest that the increase of MHC-I expression by CXCL14 is critical for CXCL14-mediated tumor suppression through the CD8+ T cell response. Overall, our findings imply that the HPV oncoprotein E7 induces immune suppression in the tumor microenvironment by downregulating CXCL14 expression in HPV-infected cells. 

  • Cxcl14 increases MHC-I expression on HPV+HNSCC cells
  • B2M KO abrogates Cxcl14-mediated tumor suppression
  • HPVE7 represses Cxcl14 expression to create the immunosuppressive micro environment (HPV E7 also represses MHC I) 
  • CXCL 14 mediated tumor suppression is reliant on antigen-specific CD8 T cells
  • MHC I expression is resorted on HPV-positive HNSCC cells by Cxcl14 expression
  • Question
    • Cxcl14, low, HPV negative HNSCC will be the next one to investigate
    • (查查 NP460EBV, 550EBV)
    • Rooney asks PDL1, L2  change or not


Oral Talk #99
Development of a Humanized Mouse Model to Dissect the Role
of T-cells in Epstein-Barr Virus Type 2 Latency and
Lymphomagenesis
Carrie B. Coleman1, Julie Lang1, Nicholas A. Smith1, Zenggang Pan2, Bradley Haverkos3, Roberta Pelanda1, Rosemary Rochford1
1Department of Immunology and Microbiology, University of Colorado, Anschutz Medical Campus, 2Department of Pathology, University of Colorado, Anschutz Medical Campus, 3Department of Hematology and Oncology, University of Colorado, Anschutz Medical Campus
Epstein-Barr virus (EBV) has been classified into two major strains, EBV Type-1 (EBV-1) and EBV Type-2 (EBV-2) based on genetic variances and differences in transforming capacity. EBV-1 readily transforms B-cells in culture while EBV-2 is poorly transforming. The differing ability to immortalize B-cells in vitro suggest that in vivo these virus strains likely use alternative approaches to establish latency. Indeed, we recently reported that EBV-2 has a unique cell tropism for T-cells, not only infecting T-cells in culture, but also infecting T-cells of healthy Kenyan infants, strongly suggesting EBV-2 infection of T-cells is a natural part of the EBV-2 life-cycle. However, limitations of human studies hamper further investigation into how EBV-2 utilizes T-cells to establish latency and/or persist. Thus, we developed an EBV-2 humanized mouse model, utilized BALB/c-Rag2null IL2rγnull SIRPα (BRGS) mice engrafted with CD34+ hematopoietic stem cells. Infection of humanized BRGS mice with EBV-2 led to infection of both T-cells and B-cells, unlike infection with EBV-1, in which virus was only detected in B-cells. Gene expression analysis demonstrated that EBV-2 established a latency III infection with evidence of ongoing viral reactivation in both B- and T-cells. Importantly, EBV-2 infected mice developed tumors resembling diffuse large B-cell lymphoma (DLBCL). These B-cell lymphomas had morphological features comparable to EBV-1 induced DLBCL and developed at similar rates with equivalent frequency as well as a latency III gene expression profile. Thus, despite the impaired ability of EBV-2 to immortalize B-cells in vitro, EBV-2 efficiently induces lymphoma development in BRGS mice. This new in vivo model can now be utilized to better understand the methods used by EBV-2 to persist and induce lymphomagenesis with specific emphasis on deciphering how EBV-2 infection of T-cells contribute to these processes. 
McGeoch and Gatherer 2007 Virology
EBV type 2 also infects T cells

Coleman et al 2017, JID T cell fractions 12 months J Infect Dis. 2017 Sep 15;216(6):670-677. Epstein-Barr Virus Type 2 Infects T Cells in Healthy Kenyan Children.  Coleman CB1, Daud II2, Ogolla SO1,3, Ritchie JA4, Smith NA1, Sumba PO3, Dent AE5, Rochford R1. 

METHODS: Purified T-cell fractions isolated from children positive for EBV-1 or EBV-2 and their mothers were examined for the presence of EBV and for EBV type.
RESULTS: We detected EBV-2 in all T-cell samples obtained from EBV-2-infected children at 12 months of age, with some children retaining EBV-2-positive T cells through 24 months of age, suggesting that EBV-2 persists in T cells. We were unable to detect EBV-2 in T-cell samples from mothers but could detect EBV-2 in samples of their breast milk and saliva.
CONCLUSIONS: These data suggest that EBV-2 uses T cells as an additional latency reservoir but that, over time, the frequency of infected T cells may drop below detectable levels. Alternatively, EBV-2 may establish a prolonged transient infection in the T-cell compartment. Collectively, these novel findings demonstrate that EBV-2 infects T cells in vivo and suggest EBV-2 may use the T-cell compartment to establish latency.  PMID: 28934430

BACKGROUND: The 2 strains of Epstein-Barr virus (EBV), EBV type 1 (EBV-1) and EBV-2, differ in latency genes, suggesting that they use distinct mechanisms to establish latency. We previously reported that EBV-2 infects T cells in vitro. In this study, we tested the possibility that EBV-2 infects T cells in vivo.

EBV-2 Hu-mouse model
BRG5 mice-BALB/.. with signal regulatory protein a gene from NOD
I pin binding its ligand CD47, SIROa imitated don't eat me
EBV 2 (LCL10 from Kenya child BL) vs EBV 1 (B958)
EBV type 2 establishes a latency III infection in T and B cells in huMice
Is EBV 2 pathogenic in huMice? Yes
Frequency, rate of tumor development, spleen, LN, kidney and or liver (9-12 month fro type 2)
EBV type 1 and 2 tumors are EBER+ with latency III gene expression program
EBV type 1 and 2 Timor’s showed morphology of diffuse llarge B-cell lymphoma with plasma last phenotype (DLBCL) latency III in both B and T cells

Cd20 downregulated when B cells differ intake tinto plasmablast
EBV 1 and 2 tumors showed remarkable similarities in in immunophenotype
Receptors for infecting T cells: — paper will be coming out soon!

Ming-Han: NPC EBV is type 1

Oral Talk #100
Repair of E6/E7 induced Breaks in Viral Genomes Leads to
Amplification
Kavi Mehta1, Laimonis Laimins1
1Northwestern University
High-risk human papillomaviruses (HPV) activate the ataxia telangiectasia mutated- dependent (ATM) DNA damage response as well as the ataxia telangiectasia mutated- dependent DNA related (ATR) pathway in the absence of external DNA damaging agents for differentiation-dependent genome amplification. Through the use of comet assays and pulsed-gel electrophoresis our studies show that these pathways are activated in response to DNA breaks induced by the viral proteins E6 and E7 alone and independent of viral replication. The majority of these virally induced DNA breaks are present in cellular DNAs and only minimally in HPV episomes. Treatment of HPV positive cells with inhibitors of both ATM and ATR leads to the fragmentation of viral episomes indicating that DNA breaks are introduced into HPV genomes but are rapidly repaired. This preferential repair occurs as a result of the preferential recruitment of homologous recombination repair enzymes, such as RAD51 and BRCA1, to viral genomes at the expense of cellular DNAs. When HPV positive cells are treated with hydroxyurea, this recruitment of RAD51 and BRCA1 to viral genomes is greatly enhanced with little recruitment to damaged cellular DNAs. Despite substantial damage to cellular DNAs, the ability of viral genomes to amplify is maintained. Overall our studies demonstrate that human papillomaviruses induce breaks into cellular and viral DNAs and that the preferential repair of these lesions in viral episomes leads to genome amplification. 

ATM and ATR DNA repair pathways

How does HPV activate DDR? Does HPV induce breaks into DNA?
V Didenko 2002 (T4 DNA algae’s assay on tissue slide)
Neutral Comet assay detects DNBs
HPV induces dsDNA breaks
E6 and E7 alone induce DNA breaks by Comet assay)
DNA breakage detection FISH on comet assay (pretty!)
Breaks are induced in HPV DNAs bit are rapidly repaired
Comet-EdU (label for newly replicating DNA also show minimal breaks in viral DNAs
DNA damage factors such as RAD51 and BRCA1 bind preferentially to HPVC genomes
Comet with 5mm hydrxyurea (Tail lengths increase upon HU)
RAD51 is preferentially recruited to the HPV genome during stress) SMC-1 RAD51
HPV amplifies normally in the presence of ydroxyurea (inducing a great number of DNA breaks)



Oral Talk #101 10:45 AM
EBV gH/gL Nanoparticle Vaccines Elicit Antibodies that
Potently Inhibit EBV Glycoprotein-Mediated B Cell and
Epithelial Cell Membrane Fusion and Neutralize Virus Infection
Wei Bu1, Gordon Joyce2, Hanh Nguyen1, Yusuke Tsujimura3, Ulrich Baxa4, Yasuhiro Yasutomi3, Gary Nabel2, Masaru Kanekiyo2, Jeffrey Cohen1
1Laboratory of Infectious Diseases, NIH, 2Vaccine Research Center, NIH, 3Laboratory of Immunoregulation and Vaccine Research, National Institutes of Biomedical Innovation, Health, and Nutrition, 4Cancer Research Technology Program, LEIDOS Biomedical Research
Epstein-Barr virus (EBV) infects both B cells and oropharyngeal epithelial cells and is associated with two distinct types of malignancies – B cell lymphoma and epithelial cell cancers. An effective prophylactic vaccine should be able to elicit neutralizing antibodies to prevent EBV infection of both B cells and epithelial cells. Since glycoproteins gH/gL are part of the viral fusion machinery and required for EBV to fuse with host cell membranes, we reasoned that antibodies specifically targeting these viral glycoproteins should block virus infection in both B cells and epithelial cells. We determined that gH/gL-specific antibodies in human plasma are the predominant antibodies that neutralize EBV infection of epithelial cells, and these antibodies, along with those to gp42, also contribute to B cell neutralization. We developed self-assembling nanoparticles that display gH/gL or gH/gL/gp42 and studied their immunogenicity in animals. Mice and nonhuman primates immunized with gH/gL or gH/gL/gp42 nanoparticles developed high levels of neutralizing antibodies that potently neutralize B cell and epithelial cell infection and exceeded titers observed in naturally infected humans. In addition to neutralizing activity, immune serum from nonhuman primates potently inhibited EBV glycoprotein-mediated fusion of epithelial cells and B cells. Sera from animals immunized twice with gH/gL nanoparticles inhibited epithelial cell fusion by 80%, while sera from animals immunized with gH/gL/gp42 nanoparticles inhibited B cell fusion by > 90%. Thus, by targeting the EBV fusion machinery with gH/gL and gH/gL/gp42 nanoparticles, both neutralizing and fusion-inhibitory antibody responses could be generated in mice as well as in nonhuman primates. Eliciting these immune response is likely to be a robust strategy that can be applied to develop vaccines to other herpesviruses.
EBV vaccine should induce antibodies to neutralise infection of both B cells and epithelial cells
EBV vaccine should include gH/gL +- gp42 each are compinets of the EBV fusion machinery
EBV gH/gL+- gp42-ferritin nanoparticles
ferritin 24-mer for repetitive array of antigen (transfect HEK293 with gH-ferritin + gL
B cell neutralizeing antibody titers remain hight titers 》 100 days after lat vaccination in mice and in Cynomologus Monkeys
Epithelial cell neutralizing antibody titers remain higher 》 100 days after last vaccination in Cynomologys Monkeys
gH/gL/gp42-ferritin induces higher EBV B cell and epithelial cell neutralizing antibodies in monkeys htan serum from EBV + humans
Epithelial and B cell fusion assays
sera from immunised monkeys inhibit B cell and epithelial cell fusion

Jul 31, 2018

Keynote Address IV: Douglas Lowy

7:00 PM Keynote Address IV Shannon Hall 

Oral Talk #96
Repetitive Structures Produce Highly Immunogenic Vaccines
Against Papillomaviruses, Polyomaviruses, and Epstein-Barr
Virus
Douglas Lowy1
1National Cancer Institute 

1. Virus infection and human cancer: an overview
Schiller JT, Lowy DR.Recent Results Cancer Res. 2014;193:1-10. doi: 10.1007/978-3-642-38965-8_1.

PMID: 24008290

2. 
Vaccines to prevent infections by oncoviruses.
Schiller JT, Lowy DR.
Annu Rev Microbiol. 2010;64:23-41. doi: 10.1146/annurev.micro.112408.134019. Review.
PMID: 20420520

Virus-like particles (VLPs)

B cells specifically recognize particulate antigens with epitope spa in golf 50-100 A as foreign

HPV virus-like particles 
USA-HPV+ cancers
OPC in man (70%)
Quadrivalent HPV vaccine safety reviews and
High efficacy of HPV L1 VLP vaccines again new cervical precancerous and genital warts by vaccine targeted types in randomized trial
Precancerous =cervical intraepithelial neoplasia grade 3(the first successful sex-transmitted viral cancer vaccine!
Directly reduce risk of infection and disease in vaccines
Herd Immunity! (Also decrease in warts numbers in men with heterosexual in Austral)
1,2,or 3 dose she if bivalve this vaccine confer at least 7 years of protection against incident HPV 16/18/31/33/.45 infection: Post-NOC analysis
% change in HPV16 VLP ELISA tigers from year 4 to year 7
Even one dose of HPV VLP vaccine induces high avidity antibodies

HBV vaccine is not s immunogenicity

Candidate VLP vaccines Dior BKV and JCV
BKV viremiua following kidney transplantation , can lead to rejection of donor kidney
Bladder cancer: integrated BKV lareget T
Neutralizing antibodies are associated with protection against BKV infection
Smaller than VLPs of papilloma virus
BKV VLPs induce neutralizing antibodies
JCV and progressive multi-focal leukoencephalopathy (PML)
Black box for PML incidence in immunosuppressive therapies
Replicating JCV in PML may escape 

A candidate repetitive array vaccine for EBV infections
Joint session 1 10:45 Jeffrey Cohen

Glycoprotein 
Gp350 | CR2
GgB

Gp350 
Gp42
Gh/gL
BMRF2?

To improve upon soluble gp350 : self-assembling nanoparticle-based vaccines
Ferritin-  Kanekiyo et al Cell 2015
Ferritin-gp350 protests mice from challenge with vaccinia circus expression gp350

Contribution f antibody EBV glycoproteins

Antibody   B cells |  Epithelial cells
    gp350 | 50-60 |        5
    gH/gL | 20-30  |     75-80
     gp42 |  10-20  |      ~5

EBV gK/gL +- gp42-ferritin nanoparticles

VLPs display is highly immunogenicity, probably attributable to to long-live plasma cells induced by the repetitive display


聽完這個後(~8PM)就和香港大學與會人士前往 The Great DANE PUB & BREWING (123 E Doty St, Madison, WI53703)聚餐





Session 10A: Immunity & Immune Therapy

Session 10A 11:00 AM – 12:30 PM Immunity & Immune Therapy (Shannon Hall)
Session Chairs: Dirk Dittmer & Rajiv Khanna


Oral Talk #84
A Role for EBNA2 in Mechanisms that Foster Some
Autoimmune Diseases
John B. Harley1,2,3,4,5, Xiaoting Chen1, Mario Pujato1, Daniel Miller1, Avery Maddox1, Carmy Forney1, Albert F. Magnusen1, Arthur Lynch1, Kashish Chetal6, Masashi Yukawa7, Artem Barski4,7,8, Nathan Salomonis4,6, Kenneth M. Kaufman1,2,4,5, Leah Kottyan1,4, Matthew T. Weirauch1,3,4,6 1Center for Autoimmune Genomics and Etiology (CAGE), Cincinnati Children's Hospital Medical Center, 2Division of Immunobiology, Cincinnati Children's Hospital Medical Center, 3Division of Developmental Biology, Cincinnati Children's Hospital Medical Center , 4Department of Pediatrics, University of Cincinnati, 5US Department of Veterans Affairs Medical Center , 6Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, 7Division of Allergy and Immunology, Cincinnati Children's Hospital Medical Center, 8Division of Human Genetics, Cincinnati Children's Hospital Medical Center 

Explaining the genetics of many diseases is challenging because most associations localize to incompletely understood regulatory regions. We show transcription factors (TFs) occupy multiple loci of individual complex genetic disorders by using novel computational methods. Application to 213 phenotypes and 1,544 TF binding datasets identifies 2,264 relationships between hundreds of TFs and 94 phenotypes, including AR in prostate cancer and GATA3 in breast cancer. Strikingly, nearly half of the systemic lupus erythematosus risk loci from Europeans are occupied by the Epstein-Barr virus (EBV) EBNA2 protein (OR=6, P

1. Strong viral associations with SLE among Filipinos.  Lupus Sci Med. 2017 Jul 28;4(1):e000214. doi: 10.1136/lupus-2017-000214. eCollection 2017.

2. A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1). PLoS Genet. 2013;9(1):e1003147.
PMID: 23326239

3. Identification of unique microRNA signature associated with lupus nephritis. PLoS One. 2010 May 11;5(5):e10344.

4. Aberrant Epstein-Barr viral infection in systemic lupus erythematosus. Autoimmun Rev. 2009 Feb;8(4):337-42.

5. Lupus-like autoantibody development in rabbits and mice after immunization with EBNA-1 fragments. J Autoimmun. 2008 Dec;31(4):362-71.

6. The curiously suspicious: a role for Epstein-Barr virus in lupus.
Harley JB, Harley IT, Guthridge JM, James JA.
Lupus. 2006;15(11):768-77. Review. PMID: 17153849



Oral Talk #85
Disruption of IL-15 Signaling and NK Cells Facilitates
Oncogenesis of Gammaherpesviruses in SIV-infected Rhesus
Macaques
Yoshinori Fukazawa1,2, Helen Li1,2, Devin Fachko1,2, Minsha Manoharan1,2, Derick M. Duell1,2, Amanda Johnson1,2, Ann Lewis2, Jeffrey D. Lifson3, Keith A. Reinmann4, Michael K. Axthelm1,2, Rebecca L. Skalsky1,2, Scott W. Wong1,2, Louis J. Picker1,2, Afam A. Okoye1,2
1Vaccine and Gene Therapy Institute, Oregon Health & Science University, 2Oregon National Primate Research Center, Oregon Health & Science University, 3AIDS and Cancer Virus Program, Leidos Biomedical Research, Inc., Frederick National Laboratory, 4MassBiologics, University of Massachusetts Medical School
Background: Lymphocryptovirus (LCV) and rhesus rhadinovirus (RRV), simian homologs of EBV and KSHV, respectively, naturally infect rhesus macaques (RM) and both viruses are associated with the development of lymphoproliferative disorder (LPD) and B cell lymphoma in simian immunodeficiency virus (SIV) infected RM. To evaluate the role of NK cells on SIV infection and LCV and RRV reactivation and lymphomagenesis, we used an IL-15-neutalizing monoclonal antibody (mAb), which profoundly depletes NK cells.
Methods: RM received anti-IL-15 at 2-week intervals either given from -6 to 8 weeks after SIV infection (long duration group, 8 doses; n=8), or given only prior to infection (short duration group, 3 doses; n=8). Another group received a control mAb on the same schedule as the long duration group (8 doses; n=8). SIV RNA in plasma and, RRV/LCV DNA in blood were quantified by RT-PCR and qPCR, respectively. RM were euthanized with AIDS-defining malignancies, which included LPD and B cell lymphomas. Histopathological examination included immunostaining for cellular markers, EBV nuclear antigen 2 (EBNA2) and RRV major capsid protein to detect EBV and RRV-infected cells, respectively.
Results: Despite massive and prolonged NK cell depletion in anti-IL-15 treatment RM, SIV replication kinetics and CD4+ T cell depletion were comparable between groups. However, in the long duration, anti-IL-15-treated group, 6 of 8 RM manifested accelerated RRV reactivation and replication as early as 6 weeks post-infection, and 5 of 8 RM presented with confirmed cases of B lymphoma. Interestingly, most tumors had high frequencies of EBNA2+ cells that were CD79adim and CD20dim/–. Almost half of the EBNA2+ cells were Ki67+ and some RM showed a preferential distribution of EBNA2+ in B cell follicles.
Conclusions: These data suggest that IL-15 and/or NK cells play a key role in protection from RRV reactivation and/or LCV-associated tumor lymphomagenesis during SIV- associated malignancies. 


Oral Talk #86
Dramatically Decreased and Delayed CD8 T-Cell Responses
During Asymptomatic EBV Seroconversion
Liisa K. Selin1, Fransenio Clark1, Rabinarayan Mishra1, Anna Gil1, Ramakanth Chirravuri2, Dario Ghersi2, Katherine Luzuriaga3
1Department of Pathology, University of Massachusetts, 2University of Nebraska, 3Program in Molecular Medicine, University of Massachusetts Medical School
Infection with EBV is strongly associated with the syndrome of acute infectious mononucleosis (AIM), with symptoms of mild to severe lymphadenopathy, sore throat, splenomegaly and prolonged fatigue. The symptoms are associated with a massive expansion of CD8+ T cells in the peripheral blood, which are mostly directed to two EBV immunodominant epitopes: BMLF1280-288 and BRLF1109-118 in HLA-A2:01+ patients. During AIM there is an expansion of unique cross-reactive CD8+ T cells between influenza A (IAV)-M158 and EBV-BMLF1, which can modulate the immune response to EBV with their frequency directly correlating with disease severity. However, little is known about EBV-specific and crossreactive CD8 T-cell responses in the vast majority of individuals, who asymptomatically seroconvert and become persistently infected with EBV. Here, we hypothesized that asymptomatic donors would have decreased EBV-specific and crossreactive CD8 T-cell responses near the time of sero-conversion as compared to AIM patients. By tracking seronegative donors at the time of college admission every 3-4 months for their 4 years in college we have identified 20 asymptomatic sero-converters who had surprisingly low or non-existent EBV lytic epitope-specific responses in the first year after sero-conversion with no evidence of cross-reactive IAV-M1/EBV-BMLF1 memory CD8 T-cell activation ex vivo. In the presence of these much lower and delayed CD8 T-cell responses, their viral loads were equivalent to AIM patients. There was tremendous individual variation in the kinetics of their CD8 T-cell responses. Surprisingly, EBV seronegative young donors (14/30) grew EBV-BRLF1-specific cells in BRLF1-peptide- stimulated cultures even years prior to sero-conversion. A few EBV seronegative young donors grew crossreactive IAV-M1 cells in EBV-BRLF1 and/or EBV-BMLF1-stimulated cultures like we have reported in long-term EBV middle-aged seronegative donors. These results are consistent with CD8 T-cell activation mediating the symptomatology of AIM, and strongly suggest that in the asymptomatic donor EBV is silently infecting the host. 

MBio. 2017 Dec 5;8(6). pii: e01841-17.
Severity of Acute Infectious Mononucleosis Correlates with Cross-Reactive Influenza CD8 T-Cell Receptor Repertoires. Aslan N1, Watkin LB1, Gil A1, Mishra R1, Clark FG1,2, Welsh RM1, Ghersi D3, Luzuriaga K4,2, Selin LK5,2.

Abstract
Fifty years after the discovery of Epstein-Barr virus (EBV), it remains unclear how primary infection with this virus leads to massive CD8 T-cell expansion and acute infectious mononucleosis (AIM) in young adults. AIM can vary greatly in severity, from a mild transient influenza-like illness to a prolonged severe syndrome.

We questioned whether expansion of a unique HLA-A2.01-restricted, cross-reactive CD8 T-cell response between influenza virus A-M158 (IAV-M1) and EBV BMLF1280 (EBV-BM) could modulate the immune response to EBV and play a role in determining the severity of AIM in 32 college students.

Only ex vivo total IAV-M1 and IAV-M1+EBV-BM cross-reactive tetramer+ frequencies directly correlated with AIM severity and were predictive of severe disease. Expansion of specific cross-reactive memory IAV-M1 T-cell receptor (TCR) Vβ repertoires correlated with levels of disease severity. There were unique profiles of qualitatively different functional responses in the cross-reactive and EBV-specific CD8 T-cell responses in each of the three groups studied, severe-AIM patients, mild-AIM patients, and seropositive persistently EBV-infected healthy donors, that may result from differences in TCR repertoire use. IAV-M1 tetramer+ cells were functionally cross-reactive in short-term cultures, were associated with the highest disease severity in AIM, and displayed enhanced production of gamma interferon, a cytokine that greatly amplifies immune responses, thus frequently contributing to induction of immunopathology. Altogether, these data link heterologous immunity via CD8 T-cell cross-reactivity to CD8 T-cell repertoire selection, function, and resultant disease severity in a common and important human infection. In particular, it highlights for the first time a direct link between the TCR repertoire with pathogenesis and the diversity of outcomes upon pathogen encounter.IMPORTANCE The pathogenic impact of immune responses that by chance cross-react to unrelated viruses has not been established in human infections. Here, we demonstrate that the severity of acute infectious mononucleosis (AIM), an Epstein-Barr virus (EBV)-induced disease prevalent in young adults but not children, is associated with increased frequencies of T cells cross-reactive to EBV and the commonly acquired influenza A virus (IAV). The T-cell receptor (TCR) repertoire and functions of these cross-reactive T cells differed between mild- and severe-AIM patients, most likely because these two groups of patients had selected different memory TCR repertoires in response to IAV infections encountered earlier. This heterologous immunity may explain variability in disease outcome and why young adults with more-developed IAV-specific memory T-cell pools have more-severe disease than children, who have less-developed memory pools. This study provides a new framework for understanding the role of heterologous immunity in human health and disease and highlights an important developing field examining the role of T-cell repertoires in the mediation of immunopathology.

PMID: 29208744



Oral Talk #87
Gammaherpesvirus Infected B Cells Display Abnormal
Repertoire
Monika Zelazowska1, Qiwen Dong2, Joshua Plummer1, Yunxiang Mu1, Yi Zhong1, Bin Liu1, Laurie Krug2, Kevin McBride1
1Department of Epigenetics and Molecular Carcinogenesis, The University of Texas MD Anderson Cancer Center, 2Department of Molecular Genetics and Microbiology, Stony Brook University
Gammaherpesviruses (γHV) are oncogenic viruses that establish lifelong latency in B cells. Chronic infection with human γHV, Kaposi's sarcoma-associated herpesvirus (KSHV) and Epstein-Barr virus (EBV) is associated with the development of lymphoproliferative diseases, lymphomas and other types of cancer. The murine equivalent of human γHV, MHV68, is widely used as an animal model for γHV infection. Primary infection is associated with mucosal tissue replication, expansion in germinal center (GC) B cells and chronic persistence in host’s memory B cells. The GC cells undergo somatic hypermutation (SHM), class switch recombination (CSR) and repertoire selection which generate long lived antibody-secreting plasma cells and memory B cells. It is unknown how the repertoire of infected cells compares to that of uninfected cells within the compartment of germinal center B cells.
We isolated and comparatively analyzed the B cell repertoire of infected and non-infected GC cells from individual mice. This was done by sequencing repertoire from both the single cells and GC populations using NGS high-throughput sequencing. We determined the effect of infection on diversity, selection, mutagenesis and expansion of clones within the GC population of a mouse. Our data indicate that repertoire from MHV68 infected B cell are distinct from noninfected GC cells and is characterized by unique clones, repertoire bias and inappropriate expansion of certain clones. Moreover, both B cell populations share CDR3 variants only on minimum level. Thus, our findings demonstrate that viral infection cause a subversion of GC mutagenic and selective processes which result in a skewed repertoire. 




Oral Talk #88
Defective EBV Particles Equipped with Latent Epitopes Offer
Increased Protection Against EBV Infection
Dwain van Zyl1,2,3,4, Ming-Han Tsai1,3,4,5, Anatoliy Shumilov1,3,4, Viktor Schneidt1,2,3,4, Rémy Poirey1,3,4,Bettina Schlehe6, Herbert Fluhr6, Josef Mautner7, Henri-Jacques Delecluse1,3,4
1German Cancer Research Center, 2Faculty of Biosciences, Heidelberg University, 3Institut National de la Santé et de la Recherche Médicale (INSERM) Unit U1074, 4German Center for Infection Research (DZIF), 5Institute of Microbiology and Immunology, National Yang-Ming University, 6Frauenklinik, University Hospital Heidelberg, 7Children’s Hospital, Technische Universität München, & Helmholtz Zentrum München
The Epstein-Barr virus (EBV) infects approximately 95% of the adult population, is the primary cause of infectious mononucleosis and has been implicated in the development of several malignancies and autoimmune diseases. EBV has a multifaceted life cycle that comprises virus lytic replication and several latency programs. Considering EBV infection holistically, we rationalised that a prophylactic EBV vaccine should prime the immune system against lytic and latent proteins. To this end, we have engineered DNA-free EBV virus-like particles and light particles (VLPs/LPs) to contain latent proteins. This was achieved by fusing latent antigens to the major tegument protein of EBV, enabling their incorporation into VLPs/LPs. In vitro and ex vivo analysis confirmed that the modified VLPs/LPs were capable of stimulating CD4+ T cells specific for lytic and latent proteins. Moreover, T cells stimulated ex vivo with modified VLPs/LPs were shown to be cytolytic and capable of restricting EBV-infected cells. Vaccination of humanised mice with VLPs/LPs containing EBNA1 afforded significantly higher protection against wild-type EBV. This suggests that increasing the spectrum of EBV antigens included in a vaccine will enhance its ability to confer sterile immunity. 


 Leukemia. 2018 Jun 20.
Antibodies conjugated with viral antigens elicit a cytotoxic T cell response against primary CLL ex vivo.
Schneidt V1,2,3,4, Ilecka M1,3,4, Dreger P5, van Zyl DG1,2,3,4, Fink S1,3,4,6, Mautner J7,8,9, Delecluse HJ10,11,12,13.

Abstract
Chronic lymphocytic leukemia (CLL) is the most frequent B cell malignancy in Caucasian adults. The therapeutic armamentarium against this incurable disease has recently seen a tremendous expansion with the introduction of specific pathway inhibitors and innovative immunotherapy. However, none of these approaches is curative and devoid of side effects.

We have used B-cell-specific antibodies conjugated with antigens (AgAbs) of the Epstein-Barr virus (EBV) to efficiently expand memory CD4+ cytotoxic T lymphocytes (CTLs) that recognized viral epitopes in 12 treatment-naive patients with CLL.

The AgAbs carried fragments from the EBNA3C EBV protein that is recognized by the large majority of the population. All CLL cells pulsed with EBNA3C-AgAbs elicited EBV-specific T cell responses, although the intensity varied across the patient collective. Interestingly, a large proportion of the EBV-specific CD4+ T cells expressed granzyme B (GrB), perforin, and CD107a, and killed CLL cells loaded with EBV antigens with high efficiency in the large majority of patients. The encouraging results from this preclinical ex vivo study suggest that AgAbs have the potential to redirect immune responses toward CLL cells in a high percentage of patients in vivo and warrant the inception of clinical trials.

PMID: 29925906


Oral Talk #89
Candidate Public T-Cell Responses to Kaposi Sarcoma
Identified through T-Cell Receptor Sequencing of Tumor
Infiltrating Lymphocytes
Warren Phipps1,2, Andrea Towlerton1, David Coffey1,2, Nixon Niyonzima3, Edus H Warren1,2
1Fred Hutchinson Cancer Research Center, 2University of Washington, 3Uganda Cancer Institute
BACKGROUND: Kaposi sarcoma (KS) development is strongly associated with immune dysfunction in the context of HIV infection, but little is known about T-lymphocyte responses against KS tumor cells or human herpesvirus-8 (HHV-8), the viral cause of KS. By comparing the composition and dynamics of the T-cell repertoire of tumor-infiltrating lymphocytes (TIL) in KS tumor samples from patients with and without favorable response to therapy, we aim to identify TIL characteristics associated with tumor regression.
METHODS: High-throughput sequencing of the T-cell receptor β chain (TRB) locus was performed of TIL from 1-2 pre-treatment and 1-2 post-treatment KS tumors and in corresponding normal skin samples, which were obtained from HIV-infected adults with KS receiving care at the Uganda Cancer Institute in Kampala, Uganda. We compared the TRB repertoire observed in serially collected tumors and in the corresponding normal skin samples to identify TRB sequences carried in candidate tumor-reactive T cells.
RESULTS: TRB sequencing has been performed to date on 182 KS tumors and 46 corresponding normal skin samples obtained from 65 HIV-infected adults with KS. TRB repertoire analysis has identified 31 unique TRB CDR3 sequences that were (i) observed in 10 or more different biopsies, and (ii) not observed in a large control population of healthy adults. Unsupervised hierarchical cluster analysis of the tumors containing these 31 sequences revealed that all of sequences were detected in multiple biopsies from individual patients and in different patients sharing class I MHC-alleles. These observations suggest that these sequences may be markers for public HHV-8-specific T cell responses.
CONCLUSIONS: Our data support the existence of public T-cell responses in KS TIL, which could have significant therapeutic value. Improved understanding of how cellular immune responses are associated with KS tumor regression may ultimately enhance KS staging approaches and guide use of increasingly targeted and effective immune-based therapies. 



Session 10B: Virus-Host Interactions II

Session Chairs: Hongyu Deng (a "She") and Cliona Rooney


Oral Talk #90
The KSHV Protein ORF68 is a Proteasome-Manipulating
Nuclease Required for DNA Packaging
Matthew Gardner1, Stephanie Gates1, Andreas Martin1, Britt Glaunsinger1
1The University of California Berkeley
Six viral proteins are required for DNA packaging into nascent herpesviral capsids and for HSV, the majority of these proteins have well established functions as part of the viral terminase complex. However, one of these proteins, UL32 in HSV-1 and ORF68 in KSHV, has a largely undefined function. We generated an ORF68.stop mutant of KSHV and confirmed that ORF68 was not required for viral gene expression or DNA replication but was essential for infectious virion production. Additionally, KSHV ORF68.stop virus did not cleave or package viral DNA and exclusively accumulated immature B-capsids. Further biochemical characterization of ORF68 revealed several novel activities for this protein that significantly expand our understanding of its function. Unexpectedly, we found that ORF68 robustly binds the KSHV terminal repeats and exhibits metal-dependent nuclease activity and dsDNA cleavage in vitro. These observations suggest a role in binding and catalytically processing the viral genome during packaging. Finally, protein-protein interaction profiling of ORF68 revealed a striking association with multiple subunits of the 20S proteasome, the main protein degradation apparatus of the cell. We revealed that ORF68 contains a canonical gate-opening motif observed in proteasome-interacting proteins. Deletion or blocking of this gate-opening motif in ORF68 inhibited the degradation of a model substrate in transfected cells, suggesting that ORF68 may assemble on proteasomes to control substrate access. Electron microscopy of recombinant ORF68 showed that it forms pentameric rings with central pores, reminiscent of cellular proteasome activators. Notably, deletion of this gate-opening motif of ORF68 in the context of KSHV prevented progeny virion production, indicating that this function is central to its role in the viral replication cycle. Given that we observe proteasomes concentrated within replication compartments, we are currently exploring the possibility that ORF68 may control protein turnover in a manner important for viral DNA packaging. 

DNA packaging is a tightly controlled process

  • ORF68 is responsible for cleavage of FNA
  • KSHV lacking ORF68 cannot cleave the replicated genome
  • Only B-capsizes are observed in the ORF68PTC virus, suggesting no problem in DNA replication but defective in packaging
  • ORF68 bonds DNA in vitro with high affinity
  • The KSHV ointeractome sows ORF68 associating with the proteasome

Mechanism of 20S gate
  • ORF68 co-purifies with the host proteasome (beta 7)
  • ORF68 contains a canonical HbYX gate ioenuing mooted so as (EBV BFLF1)
  • ORF68 C-terminal modifications inhibit proteasome degradation EGFP+PEST
  • DeltaLYA ORF68 loss the 
  • ORF68 exists a s a pentameric ring in solution
  • Deletion of the HbYX motif prevents the production of visions (viral supernatant transfer)
  • ORF68 is recruited to the replicating DNAs to chop off Pol II or enzymes like that.

Oral Talk #91
Epstein-Barr Virus Nuclear Antigen-1, Action and Reaction as
an Oncogene
Sana Alqarni1, Joanna Wilson1
1College of Medical, Veterinary and Life Sciences, University of Glasgow
Epstein-Barr virus (EBV) is associated with several tumours of B-cell and epithelia cell origin. EBV nuclear antigen 1 (EBNA1) is an essential viral protein, required for the maintenance, replication and mitotic segregation of viral genome episomes. EBNA1 is a DNA binding protein and also interacts with several cellular proteins, thereby affecting host cell-signalling pathways and in so doing may contribute to cell survival and proliferation. EBNA1 is the only latent protein that is expressed in all EBV-associated malignancies and indeed is the only viral protein consistently expressed in Burkitt lymphoma (BL) cells.
In order to explore any oncogenic mechanism attributable to EBNA1, we have studied our transgenic mouse model of BL; mice expressing EBNA1 in B-cells, which succumb to B- cell lymphoma, denoted EμEBNA1 mice. Selected cellular proteins potentially involved in the tumourigenic process were examined, including C-myc, Mdm2, E2F1, p53, Stat1, c- Fos, PTEN, Xiap and others.
Overexpression of specific Mdm2 isoforms were detected in all EBNA1 tumour samples, but not detected in the tumour samples from Eμc-Myc mice, or in non-tumour or transgene negative samples. In addition, C-Myc was overexpressed in EBNA1 tumours, supporting our previous observations regarding the cooperation of these two proteins in tumourigenesis. Using four Mdm2 inhibitors revealed that the EμEBNA1 tumour cells are dependant upon Mdm2 for survival. Additionally, Mdm2 inhibition led to loss of E2F1 expression, linking EBNA1 to Mdm2 and thence to the cell cycle. These data provide new insights into the consequences of EBNA1 expression. 

USP7   K447 IN THE DNA BINDING /DIMERIZATION  domain of EBNA1
Wilson et al 1996 EMBO J 15:

  • Line 59 : Transgenic EBNA1 EuEBNA1.59 (chr )
  • Line 26: Transgenic EBNA1 EuEBNA1.26

Line 26 appears to be sunected to translation suppression compared to line 59.
The line showing translation suppression shows treated tumor penetrate

Translation suppression Nature (2017)
Linking GlyALa to

Induction / activation of cellular genes in
Eu EBNA1 lymphoma and IL2

EuEBNA1 lymphoma, p53 and mdm2
Mdm2 are multiply spliced pser186

MDM2 is essential for survival of the EBNA1 transgenic lymphomas

Wilson JB[Author] AND (EBV[tiab] or KSHV[tiab]) 

Oral Talk #92
Genome-Wide Identification of Direct RTA Targets Reveals Key
Host Factors for KSHV Lytic Reactivation
Bernadett Papp1, Naeem Motlagh2, Richard Smindak2, Seung-Jin Jang2, Aria Sharma2, Zsolt Toth3
1University of Florida College of Dentistry, Department of Oral Biology, UF Health Cancer Center, UF Genetics Institute, UF Informatics Institute, 2University of Florida College of Dentistry, Department of Oral Biology, 3University of Florida College of Dentistry, Department of Oral Biology, UF Health Cancer Center, UF Genetics Institute
Kaposi's sarcoma-associated herpesvirus (KSHV) maintains dormancy in the body, but can reactivate which requires the essential replication and transcription activator (RTA). While it is established that RTA is required for the induction of lytic viral genes for viral reactivation, it is still unknown to what extent RTA alters the host transcriptome and epigenome in order to promote KSHV lytic cycle and pathogenesis. We hypothesized that RTA induces the expression of specific human factors, which may be critical for the subsequent virus production. Our genome-wide analysis using primary effusion lymphoma (PEL) cells showed that over one hundred human genes are directly and rapidly activated by RTA during KSHV reactivation. Furthermore, we found that RTA drives activation of cellular enhancers through epigenetic reprogramming and can also elevate transcription of active genes. We established that several of these human genes are also induced by RTA in other infected as well as uninfected cell types, highlighting them as core RTA-inducible human genes. Further investigation of one of these core RTA-induced human genes, Gamma-glutamyltransferase 6 (GGT6), established its critical role as a key player for KSHV production. GGT6 belongs to the membrane-bound GGT family of proteins, but its function remains uncharacterized. Importantly, shRNA knock down of GGT6 abrogated RTA expression and RTA-dependent lytic gene induction, KSHV production in various infected cell types such as BCBL1 and iSLKBAC16, but did not affect the latent gene LANA. Even though GGT6 depletion did not impair the induction of immediate-early EBV gene ZEBRA in KSHV/EBV co-infected JSC1 cells during viral reactivation, it's depletion impaired KSHV lytic gene induction, revealing a highly specialized feed-forward loop between RTA and GGT6 for efficient KSHV reactivation. Our results demonstrate that host genes that RTA rapidly and directly induces can be pivotal for driving the KSHV lytic cycle, identifying them as future therapeutic targets. 

TREX-BCBL1-3XFLAG-KRTA 

  • RNA-seq at 0,6,12, 24 h pi

RTA on the genome prior to reactivation
  • ChIP-seq
  • 23 peaks identified at 12 hip on the KSHV genome
  • De novo  mixture under RTA peaks on KSHV best match is RBP-jk 
  • Viral chromatin changes during RTA expression
RTA bunting on the host genome during reactivation
  • RTA binds to 11469 sites on the genome
  • 80% are euchromatin-markers during reactivity
  • RTA converts “unmarked” genomeiuc regions to H3K4me2+/H3K27ac+
  • 20% if RTA binding sites are unmarked during latency
  • 50@ of these unmarked sites
Deregulation;acted most gene expression in B cel lymphoma cells upon lytic KSHV reactivation
  • induced 1280
  • Repressed 1522
  • 123 host genes are directly bound by RTA
    • Characterization of the 123 core RTA bound and rapidly induced host genes
    • Cellular component analysis 
    • Plasma membrane (30% belong to plasma membrane protein)
    • GGT6
    • HEY1, HEY2, APOBEC3C, 3H
Testing the role of RBP-JK in RTA induced cellular genes

RBP-JK is required for RTA driven reaction and rapid RTA driven induction of the majority of fire RTA target genes in uninflected cells, (iSLK cells KSKV-)

GGT6 is an characterized membrane protein

Gamma Glutamyl-transferase 6

Oral Talk #93
EBV Lytic Replication in mTOR-Inhibited Epithelial Cells is
Correlated with YY1 and Mnk1/2 Activities
Amy L. Adamson1, Dana Jeffus1, Steven Moran1, Alexis Davis1
1University of North Carolina at Greensboro
EBV lytic replication is dependent upon the expression of the immediate-early genes BZLF1 (Z) and BRLF1 (R). We found that the mTOR pathway plays a key role in regulating Z and R transcript levels in a cell type dependent manner. Here we describe our findings on how the transcription factor and target of mTOR, YY1, participates in the regulation of Z and R transcription under mTOR inhibition via rapamycin. We also demonstrate an association between rapamycin treatment and the increased presence of phosphorylated Mnk1/2 (MAPK interacting kinase 1/2), which persistently localizes with Z protein in EBV- positive epithelial cells, but not B cells. The persistent activation of Mnk under these conditions may facilitate continued, even increased, EBV lytic replication under conditions where translation should be halted. 

EBV and MTOR

  • MTOR as a modifier of Z and R 
  • Rapamycin effects on lytic replication are cell-type specific
    • Up in epithelial cells
    • Down in B cells

Is early lytic replication associated with activation of mTORC1 pathways?
  • Different in B cos epithelial cells?
  • Change when mTORC1 inhibited?
  • P70
  • Mnk1/2: highly responsive to EBV replication and is rapamycin dependent (AGS-BDneo)
  • P-Mnl expression correlates with Z expression
  • In epithelial cells, p-Mnk presence correlates with p-ERK 
  • In B cells, Z/p-Mnk presenc ecorrelated more with p-28
  • P-eIF4E also associated with early lytic replication
  • Time course of Z and p-Mnk (Z seems to appear first
  • B: Rap or MEK inhibitor -> Z down and p-Mnk down (but not PML bodies)
  • Preliminary: Mnk1/2 especially Mnk1 levels impact lytic
YY1 is an abundant TF, known to be an activator or repoessor , phosphorylation by MTOR
Generally a respressor of viral gene transcription
In response to mTORC1 inhibitorpm with rapamycin
YY1 inhibits X expression in B cells


Oral Talk #94
Interferon-Stimulated Gene Product RNF213 Modulates KSHV
Lytic Replication and Latency via Targeting RTA
Huabin Tian1, Kuai Yu1,2, Liang He1,2, Hongtao Xu1, Chuanhui Han1, Liguo Zhang1, Guangxia Gao1, Hongyu Deng1,2,3
1CAS Key Laboratory of Infection and Immunity, Institute of Biophysics, Chinese Academy of Sciences, 2University of the Chinese Academy of Sciences, 3CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences
Kaposi’s sarcoma-associated herpesvirus (KSHV) is an oncogenic γ-herpesvirus associated with several human malignancies, including Kaposi’s sarcoma and primary effusion lymphoma. The life cycle of KSHV infection consists of two phases: latency and lytic replication. The mechanisms by which host innate immune responses regulate KSHV latency remain largely unknown. We previously reported that RNF213, an interferon- stimulated gene product, inhibits the lytic replication of murine gammaherpesvirus-68 (MHV-68) through targeting MHV-68 RTA, the viral “molecular switch”. In this study, we further investigated the role of RNF213 in KSHV de novo infection and reactivation. We report that KSHV de novo infection induced RNF213 expression. Overexpression of RNF213 remarkably suppressed KSHV de novo infection as well as reactivation, whereas knock-down of endogenous RNF213 significantly promoted KSHV lytic infection and reactivation. Further analysis revealed that RNF213 interacted with KSHV RTA and served as an E3 ligase to ubiquitinate and degrade KSHV RTA through the proteasome pathway. Taken together, our results indicated that RNF213 plays an important role in modulating KSHV life cycle. 

Cytotoxic nuclei acid pattern recognition and activation of ISGs
RNF213

  • 58.5 kD
  • Expressed in all tissues, higher mRNA levels in immune tissues
  • GWAS identified RNF213 as a susceptibility gene

De novo infection of KSHV in HUVEC cells increases RNA213 expression

Inhibition of KSHV de novo infection by RNA213 expression

RNA213 suppresses transcriptional activation by RTA
  • Treatment of proteasome inhibitor MG132
  • RNF213 promotes poly ubiquity national RTA via K48 linkage

Oral Talk #95
An Analog Sensitive Derivative of the Epstein Barr Virus v-Cdk
Permits the Direct Identification of Substrates Participating in
Multiple Stages of Gene Expression
Angie Umaña1, Robert F. Kalejta1
1University of Wisconsin-Madison
Viral cyclin-dependent kinases (v-Cdks) functionally emulate their cellular Cdk counterparts. Such viral mimicry is an established phenomenon that we extend here through chemical genetics. Kinases contain gatekeeper residues that limit the size of molecules that can be accommodated within the enzyme active site. Mutating gatekeeper residues to smaller amino acids allows larger molecules access to the active site. Such mutants can utilize bio-orthoganol ATPs for phosphate transfer and are inhibited by compounds ineffective against the wild type protein, and thus are referred to as analog- sensitive (AS) kinases. We identified the gatekeeper residue of the v-Cdk encoded by the Epstein-Barr Virus (EBV) and mutated it to generate an active AS kinase. This AS-v-Cdk was used to transfer a thiolated phosphate group to targeted proteins which were then purified through covalent capture and identified by mass spectrometry. Pathway analysis of these newly identified direct substrates of the EBV v-Cdk extends the potential influence of this kinase into all stages of gene expression (transcription, splicing, mRNA export, and translation). Our work demonstrates the biochemical similarity of the cellular and viral CDKs, as well as the utility of AS v-Cdks for substrate identification to increase our understanding of Cdk biology, viral infections and cancer. 

Identifying direct substrate of BGLF4
  • Bump ATP PNBM 
  • Bio-orhtoganol ATP
  • ATP analog (AD) gatekeeper residue 
  • By structural homologous Cdk2  to identify gatekeeper residue —> analog sensitive
  • CHALFMPQFRC SLQD
  • Identifying AS-kinases through selective inhibition
  • Labeling and capturing substrates with AS-kinases
  • AS1 and AS2 : 21 proteins common